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Helicobacter rodentium group (Species)

Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; Helicobacteraceae; Helicobacter; Helicobacter rodentium group;

This taxon was found in 12.67% of laboratory mice cecum, 3.72% of laboratory mice feces, 90.82% of wild mice ileocecum, 100.0% of wild mice cecum (with ≥1% threshold).

Relative abundance

Relative abundance in each sample

Sample accession Project accession Sampling location Genotype Vendor Origin Count Relative abundance (%)
SRS2290083 SRP109346 Ileocecum Mus musculus domesticus Wild mouse Wild 4887 37.49
SRS2290023 SRP109346 Ileocecum Mus musculus domesticus Wild mouse Wild 4986 36.98
SRS2290102 SRP109346 Ileocecum Mus musculus domesticus Wild mouse Wild 13341 34.06
SRS2290099 SRP109346 Ileocecum Mus musculus domesticus Wild mouse Wild 4381 33.37
SRS2290032 SRP109346 Ileocecum Mus musculus domesticus Wild mouse Wild 2835 31.02
SRS2290121 SRP109346 Ileocecum Mus musculus domesticus Wild mouse Wild 3146 30.07
SRS2290167 SRP109346 Ileocecum Mus musculus domesticus Wild mouse Wild 3878 29.32
SRS2290053 SRP109346 Ileocecum Mus musculus domesticus Wild mouse Wild 2659 28.70
SRS2290057 SRP109346 Ileocecum Mus musculus domesticus Wild mouse Wild 2916 28.57
SRS2290117 SRP109346 Ileocecum Mus musculus domesticus Wild mouse Wild 10693 27.93
SRS2290238 SRP109346 Ileocecum Mus musculus domesticus Wild mouse Wild 5892 27.42
SRS2290048 SRP109346 Ileocecum Mus musculus domesticus Wild mouse Wild 3272 25.62
SRS2290052 SRP109346 Ileocecum Mus musculus domesticus Wild mouse Wild 3672 25.28
SRS2290056 SRP109346 Ileocecum Mus musculus domesticus Wild mouse Wild 2398 25.07
SRS2290061 SRP109346 Ileocecum Mus musculus domesticus Wild mouse Wild 3095 24.76
SRS2290039 SRP109346 Ileocecum Mus musculus domesticus Wild mouse Wild 3545 24.28
SRS2290014 SRP109346 Ileocecum Mus musculus domesticus Wild mouse Wild 3144 22.72
SRS2290158 SRP109346 Ileocecum Mus musculus domesticus Wild mouse Wild 9889 22.22
SRS2290081 SRP109346 Ileocecum Mus musculus domesticus Wild mouse Wild 8571 20.46
SRS5679046 SRP230331 Cecum C57BL/6 Charles River Laboratories Laboratory 791 20.22
SRS2290211 SRP109346 Ileocecum Mus musculus domesticus Wild mouse Wild 2882 20.15
SRS2290237 SRP109346 Ileocecum Mus musculus domesticus Wild mouse Wild 2043 19.40
SRS2290077 SRP109346 Ileocecum Mus musculus domesticus Wild mouse Wild 9037 18.87
SRS2290119 SRP109346 Ileocecum Mus musculus domesticus Wild mouse Wild 2144 18.81
SRS2290165 SRP109346 Ileocecum Mus musculus domesticus Wild mouse Wild 1774 18.78
SRS2290213 SRP109346 Ileocecum Mus musculus domesticus Wild mouse Wild 2012 18.58
SRS2290200 SRP109346 Ileocecum Mus musculus domesticus Wild mouse Wild 5606 18.12
SRS2290239 SRP109346 Ileocecum Mus musculus domesticus Wild mouse Wild 2205 17.32
SRS2290243 SRP109346 Ileocecum Mus musculus domesticus Wild mouse Wild 6121 17.12
SRS2290212 SRP109346 Ileocecum Mus musculus domesticus Wild mouse Wild 2135 16.18
SRS2290216 SRP109346 Ileocecum Mus musculus domesticus Wild mouse Wild 2325 16.13
SRS2290085 SRP109346 Ileocecum Mus musculus domesticus Wild mouse Wild 1931 16.13
SRS2290217 SRP109346 Ileocecum Mus musculus domesticus Wild mouse Wild 2577 15.87
SRS2290100 SRP109346 Ileocecum Mus musculus domesticus Wild mouse Wild 6255 15.56
SRS2290055 SRP109346 Ileocecum Mus musculus domesticus Wild mouse Wild 2293 15.47
SRS2290241 SRP109346 Ileocecum Mus musculus domesticus Wild mouse Wild 4468 15.32
SRS2290209 SRP109346 Ileocecum Mus musculus domesticus Wild mouse Wild 1489 14.69
SRS2290215 SRP109346 Ileocecum Mus musculus domesticus Wild mouse Wild 1234 13.85
SRS2290058 SRP109346 Ileocecum Mus musculus domesticus Wild mouse Wild 1727 13.63
SRS2290198 SRP109346 Ileocecum Mus musculus domesticus Wild mouse Wild 3026 13.59
SRS2290101 SRP109346 Ileocecum Mus musculus domesticus Wild mouse Wild 2015 13.28
SRS5679068 SRP230331 Cecum C57BL/6 Charles River Laboratories Laboratory 681 13.24
SRS2290148 SRP109346 Ileocecum Mus musculus domesticus Wild mouse Wild 1794 12.84
SRS2290096 SRP109346 Ileocecum Mus musculus domesticus Wild mouse Wild 1892 12.74
SRS5679035 SRP230331 Cecum C57BL/6 Charles River Laboratories Laboratory 709 12.40
SRS2290201 SRP109346 Ileocecum Mus musculus domesticus Wild mouse Wild 4002 12.30
SRS2290124 SRP109346 Ileocecum Mus musculus domesticus Wild mouse Wild 4490 11.62
SRS2290205 SRP109346 Ileocecum Mus musculus domesticus Wild mouse Wild 3983 11.51
SRS2290157 SRP109346 Ileocecum Mus musculus domesticus Wild mouse Wild 3966 11.49
SRS2290163 SRP109346 Ileocecum Mus musculus domesticus Wild mouse Wild 4450 11.35
SRS2290242 SRP109346 Ileocecum Mus musculus domesticus Wild mouse Wild 1181 11.21
SRS2290214 SRP109346 Ileocecum Mus musculus domesticus Wild mouse Wild 1487 11.09
SRS2290078 SRP109346 Ileocecum Mus musculus domesticus Wild mouse Wild 3975 10.88
SRS2290103 SRP109346 Ileocecum Mus musculus domesticus Wild mouse Wild 1230 10.83
SRS2290073 SRP109346 Ileocecum Mus musculus domesticus Wild mouse Wild 3852 10.79
SRS2290203 SRP109346 Ileocecum Mus musculus domesticus Wild mouse Wild 3439 10.47
SRS2290140 SRP109346 Ileocecum Mus musculus domesticus Wild mouse Wild 1919 10.44
SRS2290104 SRP109346 Ileocecum Mus musculus domesticus Wild mouse Wild 1379 10.43
SRS2290204 SRP109346 Ileocecum Mus musculus domesticus Wild mouse Wild 3578 10.35
SRS2290107 SRP109346 Ileocecum Mus musculus domesticus Wild mouse Wild 1206 10.21
SRS2290018 SRP109346 Ileocecum Mus musculus domesticus Wild mouse Wild 1449 10.14
SRS2290015 SRP109346 Ileocecum Mus musculus domesticus Wild mouse Wild 1055 9.74
SRS4889617 SRP200540 Cecum Mus musculus domesticus Wild mouse Wild 4720 9.69
SRS2290024 SRP109346 Ileocecum Mus musculus domesticus Wild mouse Wild 1117 9.69
SRS2290164 SRP109346 Ileocecum Mus musculus domesticus Wild mouse Wild 1368 9.68
SRS2290208 SRP109346 Ileocecum Mus musculus domesticus Wild mouse Wild 1070 9.58
SRS5679057 SRP230331 Cecum C57BL/6 Charles River Laboratories Laboratory 641 9.58
SRS4889698 SRP200540 Cecum Mus musculus domesticus Wild mouse Wild 2811 9.40
SRS2290031 SRP109346 Ileocecum Mus musculus domesticus Wild mouse Wild 1107 8.08
SRS2290202 SRP109346 Ileocecum Mus musculus domesticus Wild mouse Wild 1925 7.95
SRS5679078 SRP230331 Cecum C57BL/6 Charles River Laboratories Laboratory 306 7.88
SRS2290210 SRP109346 Ileocecum Mus musculus domesticus Wild mouse Wild 841 7.69
SRS4889343 SRP200540 Cecum Mus musculus domesticus Wild mouse Wild 2251 7.67
SRS5679025 SRP230331 Cecum C57BL/6 Charles River Laboratories Laboratory 309 7.67
SRS2290016 SRP109346 Ileocecum Mus musculus domesticus Wild mouse Wild 973 7.64
SRS2290244 SRP109346 Ileocecum Mus musculus domesticus Wild mouse Wild 2114 7.50
SRS2290160 SRP109346 Ileocecum Mus musculus domesticus Wild mouse Wild 1025 7.27
SRS5679079 SRP230331 Cecum C57BL/6 Charles River Laboratories Laboratory 346 7.19
SRS2290074 SRP109346 Ileocecum Mus musculus domesticus Wild mouse Wild 871 7.11
SRS2290206 SRP109346 Ileocecum Mus musculus domesticus Wild mouse Wild 2070 6.99
SRS2290076 SRP109346 Ileocecum Mus musculus domesticus Wild mouse Wild 2351 6.90
SRS2290020 SRP109346 Ileocecum Mus musculus domesticus Wild mouse Wild 1022 6.74
SRS5679077 SRP230331 Cecum C57BL/6 Charles River Laboratories Laboratory 300 6.57
SRS5679033 SRP230331 Cecum C57BL/6 Charles River Laboratories Laboratory 147 6.36
SRS2290106 SRP109346 Ileocecum Mus musculus domesticus Wild mouse Wild 3295 6.28
SRS2290093 SRP109346 Ileocecum Mus musculus domesticus Wild mouse Wild 925 6.07
SRS2290079 SRP109346 Ileocecum Mus musculus domesticus Wild mouse Wild 2968 6.01
SRS2290105 SRP109346 Ileocecum Mus musculus domesticus Wild mouse Wild 1209 5.98
SRS2290059 SRP109346 Ileocecum Mus musculus domesticus Wild mouse Wild 2079 5.97
SRS2290233 SRP109346 Ileocecum Mus musculus domesticus Wild mouse Wild 1822 5.86
SRS2290207 SRP109346 Ileocecum Mus musculus domesticus Wild mouse Wild 2415 5.82
SRS4889619 SRP200540 Cecum Mus musculus domesticus Wild mouse Wild 2559 5.80
SRS2290159 SRP109346 Ileocecum Mus musculus domesticus Wild mouse Wild 689 5.78
SRS5679023 SRP230331 Cecum C57BL/6 Charles River Laboratories Laboratory 209 5.37
SRS5679080 SRP230331 Cecum C57BL/6 Charles River Laboratories Laboratory 228 5.14
SRS2290084 SRP109346 Ileocecum Mus musculus domesticus Wild mouse Wild 636 4.95
SRS1872579 SRP095440 Feces C57BL/6 Shanghai Laboratory Animal Center Laboratory 1044 4.84
SRS5679030 SRP230331 Cecum C57BL/6 Charles River Laboratories Laboratory 153 4.66
SRS2290234 SRP109346 Ileocecum Mus musculus domesticus Wild mouse Wild 846 4.08
SRS2290072 SRP109346 Ileocecum Mus musculus domesticus Wild mouse Wild 515 4.06
SRS4889696 SRP200540 Cecum Mus musculus domesticus Wild mouse Wild 2163 3.87
SRS4889367 SRP200540 Cecum Mus musculus domesticus Wild mouse Wild 1508 3.86
SRS4889336 SRP200540 Cecum Mus musculus domesticus Wild mouse Wild 1711 3.85
SRS2290240 SRP109346 Ileocecum Mus musculus domesticus Wild mouse Wild 1027 3.84
SRS5679028 SRP230331 Cecum C57BL/6 Charles River Laboratories Laboratory 122 3.41
SRS5679032 SRP230331 Cecum C57BL/6 Charles River Laboratories Laboratory 99 3.15
SRS5679026 SRP230331 Cecum C57BL/6 Charles River Laboratories Laboratory 156 3.05
SRS4889366 SRP200540 Cecum Mus musculus domesticus Wild mouse Wild 1263 2.75
SRS5679034 SRP230331 Cecum C57BL/6 Charles River Laboratories Laboratory 127 2.68
SRS2290136 SRP109346 Ileocecum Mus musculus domesticus Wild mouse Wild 272 2.37
SRS2290075 SRP109346 Ileocecum Mus musculus domesticus Wild mouse Wild 1052 2.33
SRS1872567 SRP095440 Feces C57BL/6 Shanghai Laboratory Animal Center Laboratory 377 2.27
SRS2290082 SRP109346 Ileocecum Mus musculus domesticus Wild mouse Wild 252 2.19
SRS2290175 SRP109346 Ileocecum Mus musculus domesticus Wild mouse Wild 1140 2.12
SRS5679024 SRP230331 Cecum C57BL/6 Charles River Laboratories Laboratory 68 1.84
SRS1872573 SRP095440 Feces C57BL/6 Shanghai Laboratory Animal Center Laboratory 310 1.78
SRS1872566 SRP095440 Feces C57BL/6 Shanghai Laboratory Animal Center Laboratory 328 1.76
SRS1872565 SRP095440 Feces C57BL/6 Shanghai Laboratory Animal Center Laboratory 364 1.75
SRS5679031 SRP230331 Cecum C57BL/6 Charles River Laboratories Laboratory 70 1.72
SRS1872596 SRP095440 Feces C57BL/6 Shanghai Laboratory Animal Center Laboratory 316 1.70
SRS1872576 SRP095440 Feces C57BL/6 Shanghai Laboratory Animal Center Laboratory 328 1.67
SRS2290162 SRP109346 Ileocecum Mus musculus domesticus Wild mouse Wild 306 1.56
SRS5679029 SRP230331 Cecum C57BL/6 Charles River Laboratories Laboratory 72 1.43
SRS1872586 SRP095440 Feces C57BL/6 Shanghai Laboratory Animal Center Laboratory 288 1.36
SRS1872571 SRP095440 Feces C57BL/6 Shanghai Laboratory Animal Center Laboratory 233 1.21
SRS1872568 SRP095440 Feces C57BL/6 Shanghai Laboratory Animal Center Laboratory 219 1.20
SRS1872589 SRP095440 Feces C57BL/6 Shanghai Laboratory Animal Center Laboratory 196 1.20
SRS1872600 SRP095440 Feces C57BL/6 Shanghai Laboratory Animal Center Laboratory 190 1.16
SRS1872580 SRP095440 Feces C57BL/6 Shanghai Laboratory Animal Center Laboratory 245 1.12
SRS1872569 SRP095440 Feces C57BL/6 Shanghai Laboratory Animal Center Laboratory 176 1.06
SRS1872570 SRP095440 Feces C57BL/6 Shanghai Laboratory Animal Center Laboratory 171 0.92
SRS1872588 SRP095440 Feces C57BL/6 Shanghai Laboratory Animal Center Laboratory 154 0.86
SRS2290161 SRP109346 Ileocecum Mus musculus domesticus Wild mouse Wild 402 0.82
SRS1872584 SRP095440 Feces C57BL/6 Shanghai Laboratory Animal Center Laboratory 167 0.82
SRS1872587 SRP095440 Feces C57BL/6 Shanghai Laboratory Animal Center Laboratory 143 0.77
SRS1872572 SRP095440 Feces C57BL/6 Shanghai Laboratory Animal Center Laboratory 133 0.77
SRS1872597 SRP095440 Feces C57BL/6 Shanghai Laboratory Animal Center Laboratory 132 0.75
SRS4889824 SRP200540 Feces C57BL/6 Taconic Biosciences Laboratory 13 0.36
SRS2290021 SRP109346 Ileocecum Mus musculus domesticus Wild mouse Wild 17 0.16
SRS2290050 SRP109346 Ileocecum Mus musculus domesticus Wild mouse Wild 13 0.08
SRS2290086 SRP109346 Ileocecum Mus musculus domesticus Wild mouse Wild 5 0.05
SRS2290017 SRP109346 Ileocecum Mus musculus domesticus Wild mouse Wild 7 0.05
SRS1099750 SRP064488 Feces C57BL/6 The Jackson Laboratory Laboratory 3 0.03
SRS2290049 SRP109346 Ileocecum Mus musculus domesticus Wild mouse Wild 2 0.02
SRS4889697 SRP200540 Feces C57BL/6 Taconic Biosciences Laboratory 7 0.02
SRS4889319 SRP200540 Feces C57BL/6 Taconic Biosciences Laboratory 4 0.02
SRS2290051 SRP109346 Ileocecum Mus musculus domesticus Wild mouse Wild 2 0.02
SRS4889870 SRP200540 Feces C57BL/6 Taconic Biosciences Laboratory 5 0.02
SRS1099749 SRP064488 Feces C57BL/6 The Jackson Laboratory Laboratory 2 0.02
SRS4889693 SRP200540 Feces C57BL/6 Taconic Biosciences Laboratory 5 0.02
SRS4889876 SRP200540 Feces C57BL/6 Taconic Biosciences Laboratory 4 0.01
SRS4889707 SRP200540 Feces C57BL/6 Taconic Biosciences Laboratory 4 0.01
SRS4889273 SRP200540 Feces C57BL/6 The Jackson Laboratory Laboratory 4 0.01
SRS4889869 SRP200540 Feces C57BL/6 Taconic Biosciences Laboratory 4 0.01
SRS4889877 SRP200540 Feces C57BL/6 Taconic Biosciences Laboratory 4 0.01
SRS4889326 SRP200540 Feces C57BL/6 Taconic Biosciences Laboratory 4 0.01
SRS4889871 SRP200540 Feces C57BL/6 Taconic Biosciences Laboratory 4 0.01
SRS4889868 SRP200540 Feces C57BL/6 Taconic Biosciences Laboratory 3 0.01
SRS4889810 SRP200540 Feces C57BL/6 The Jackson Laboratory Laboratory 3 0.01
SRS4889551 SRP200540 Feces C57BL/6 The Jackson Laboratory Laboratory 4 0.01
SRS4889324 SRP200540 Feces C57BL/6 Taconic Biosciences Laboratory 3 0.01
SRS4889695 SRP200540 Feces C57BL/6 Taconic Biosciences Laboratory 3 0.01
SRS4889872 SRP200540 Feces C57BL/6 Taconic Biosciences Laboratory 3 0.01
SRS4889769 SRP200540 Feces C57BL/6 Taconic Biosciences Laboratory 2 0.01
SRS4889220 SRP200540 Feces C57BL/6 The Jackson Laboratory Laboratory 3 0.01
SRS4889699 SRP200540 Feces C57BL/6 Taconic Biosciences Laboratory 2 0.01
SRS4889694 SRP200540 Feces C57BL/6 Taconic Biosciences Laboratory 3 0.01
SRS4889875 SRP200540 Feces C57BL/6 Taconic Biosciences Laboratory 2 0.01
SRS4889701 SRP200540 Feces C57BL/6 Taconic Biosciences Laboratory 2 0.01
SRS3667863 SRP157514 Feces C57BL/6 Charles River Laboratories Laboratory 2 0.01
SRS4889530 SRP200540 Feces C57BL/6 The Jackson Laboratory Laboratory 2 0.01
SRS3667866 SRP157514 Feces C57BL/6 Charles River Laboratories Laboratory 2 0.01
SRS3667882 SRP157514 Feces C57BL/6 Charles River Laboratories Laboratory 2 0.01
SRS4889826 SRP200540 Feces C57BL/6 Taconic Biosciences Laboratory 2 0.01
SRS3667867 SRP157514 Feces C57BL/6 Charles River Laboratories Laboratory 2 0.01
SRS4889325 SRP200540 Feces C57BL/6 Taconic Biosciences Laboratory 2 0.00
SRS3667902 SRP157514 Cecum C57BL/6 Charles River Laboratories Laboratory 2 0.00
SRS4889553 SRP200540 Feces C57BL/6 The Jackson Laboratory Laboratory 2 0.00
ERS2716278 ERP110263 Ileum C57BL/6 Envigo Laboratory 2 0.00
SRS4889327 SRP200540 Feces C57BL/6 Taconic Biosciences Laboratory 2 0.00